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Galaxy Mcp

MCP server · by galaxyproject

Developer Tools Python v1.3.0

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

View source ↗ More servers

Install

Run one of the commands below, then add the client config underneath.

Pythonuvx galaxy-mcp

Client configuration

Paste into Claude Desktop, Cursor (mcp.json), VS Code or any MCP client, then restart the client.

mcpServers{
  "mcpServers": {
    "galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ]
    }
  }
}

About this server

Galaxy Mcp is listed in the Developer Tools category of the MCPNav directory. It is distributed as Python and can be loaded by any client that speaks the Model Context Protocol.

Typical uses include giving your assistant scoped access to the corresponding service so it can answer questions and take actions with real data instead of guessing. Always review what a server can access before you enable it — see our MCP security guide.

Frequently asked questions

What is the Galaxy Mcp MCP server?

Galaxy Mcp is an MCP server by galaxyproject. MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

How do I install Galaxy Mcp?

Install it with: uvx galaxy-mcp. Then add the JSON config to your client's MCP settings and restart the client.

Is Galaxy Mcp free to use?

The MCP server itself is free to install. The source is public on https://github.com/galaxyproject/galaxy-mcp. Any third-party API it calls (such as a search or maps API) may require its own key and billing.

Which clients support Galaxy Mcp?

Any MCP-compatible client can use it, including Claude Desktop, Cursor, VS Code, Windsurf and custom agents.