ChatSpatial

Developer Tools Python v1.6.0

Schema-enforced spatial transcriptomics analysis with 20 tools and 67 methods via MCP

View source ↗ Website ↗ Generate config for multiple servers More servers

Install

Pin version registry version 1.6.0

Python
uvx chatspatial

Python
uvx chatspatial@1.6.0

Setup by client

Pick your client — the config below is generated for this server (local stdio). Copy respects the “Pin version” switch above.

claude_desktop_config.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial@1.6.0"
      ]
    }
  }
}

Format verified against the official Claude Desktop docs ↗.

terminal

claude mcp add chatspatial -- uvx chatspatial

claude mcp add chatspatial -- uvx chatspatial@1.6.0

Format verified against the official Claude Code docs ↗.

.cursor/mcp.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial@1.6.0"
      ]
    }
  }
}

Format verified against the official Cursor docs ↗.

.vscode/mcp.json

{
  "servers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

{
  "servers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial@1.6.0"
      ]
    }
  }
}

Format verified against the official VS Code docs ↗.

mcp_config.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial@1.6.0"
      ]
    }
  }
}

Format verified against the official Windsurf docs ↗.

GitHub

⭐ 44 stars · 最近更新于 16 天前 · MIT license

About this server

ChatSpatial MCP server for spatial transcriptomics analysis via natural language ChatSpatial replaces ad hoc LLM code generation with schema enforced orchestration . Instead o…

Summary from the project README — github.com/cafferychen777/ChatSpatial

Distributed as Python, listed under Developer Tools. Review our MCP security guide before granting access to real data.

Frequently asked questions

What does the ChatSpatial MCP server do?

ChatSpatial MCP server for spatial transcriptomics analysis via natural language ChatSpatial replaces ad hoc LLM code generation with schema enforced orchestration . Instead o

How do I install ChatSpatial?

Run the install command shown above, then paste the config for your client (Claude Desktop, Claude Code, Cursor, VS Code or Windsurf) into its MCP settings and restart the client.

Is ChatSpatial free to use?

The MCP server itself is free to install. The source is public on https://github.com/cafferychen777/ChatSpatial. Any third-party service it calls may require its own API key and account.

Which clients support ChatSpatial?

Any MCP-compatible client can use it, including Claude Desktop, Claude Code, Cursor, VS Code, Windsurf and custom agents.

Add this badge

Publish this server? Link back with a badge on your README or site — copy either snippet.

Markdown

[![Listed on MCPNav](https://mcpnav.net/badge/chatspatial.svg)](https://mcpnav.net/server/chatspatial/)

HTML

<a href="https://mcpnav.net/server/chatspatial/"><img src="https://mcpnav.net/badge/chatspatial.svg" alt="Listed on MCPNav" height="20"></a>