AlphaFold Sovereign MCP

MCP server · by smaniches

Databases Python v1.5.2

MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph

View source ↗ Generate config for multiple servers More servers

Install

Run one of the commands below, then pick your client in the next section.

Python
uvx alphafold-sovereign-mcp

Setup by client

Pick your client — the config below is generated for this server (local stdio).

claude_desktop_config.json

{
  "mcpServers": {
    "alphafold-sovereign-mcp": {
      "command": "uvx",
      "args": [
        "alphafold-sovereign-mcp"
      ]
    }
  }
}

Format verified against the official Claude Desktop docs ↗.

terminal

claude mcp add alphafold-sovereign-mcp -- uvx alphafold-sovereign-mcp

Format verified against the official Claude Code docs ↗.

.cursor/mcp.json

{
  "mcpServers": {
    "alphafold-sovereign-mcp": {
      "command": "uvx",
      "args": [
        "alphafold-sovereign-mcp"
      ]
    }
  }
}

Format verified against the official Cursor docs ↗.

.vscode/mcp.json

{
  "servers": {
    "alphafold-sovereign-mcp": {
      "command": "uvx",
      "args": [
        "alphafold-sovereign-mcp"
      ]
    }
  }
}

Format verified against the official VS Code docs ↗.

mcp_config.json

{
  "mcpServers": {
    "alphafold-sovereign-mcp": {
      "command": "uvx",
      "args": [
        "alphafold-sovereign-mcp"
      ]
    }
  }
}

Format verified against the official Windsurf docs ↗.

About this server

Distributed as Python, listed under Databases. Review our MCP security guide before granting access to real data.

Frequently asked questions

How do I install AlphaFold Sovereign MCP?

Run the install command shown above, then paste the config for your client (Claude Desktop, Claude Code, Cursor, VS Code or Windsurf) into its MCP settings and restart the client.

Is AlphaFold Sovereign MCP free to use?

The MCP server itself is free to install. The source is public on https://github.com/smaniches/alphafold-sovereign-mcp. Any third-party service it calls may require its own API key and account.

Which clients support AlphaFold Sovereign MCP?

Any MCP-compatible client can use it, including Claude Desktop, Claude Code, Cursor, VS Code, Windsurf and custom agents.

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